Add indented bullet reflow test, improve undo edge cases, and bump version

- Added `test_reflow_indented_bullets.cc` to verify correct reflow handling for indented bullet points.
- Enhanced undo system with additional tests for cursor adjacency, explicit grouping, branching, newline independence, and dirty-state tracking.
- Introduced external modification detection for files and required confirmation before overwrites.
- Refactored buffer save logic to use atomic writes and track on-disk identity.
- Updated CMake to include new test files and bumped version to 1.6.4.

tests/test_reflow_indented_bullets.cc

@@ -0,0 +1,78 @@
+#include "Test.h"
+
+#include "Buffer.h"
+#include "Command.h"
+#include "Editor.h"
+
+#include <iostream>
+#include <string>
+
+
+static std::string
+to_string_rows(const Buffer &buf)
+{
+	std::string out;
+	for (const auto &r: buf.Rows()) {
+		out += static_cast<std::string>(r);
+		out.push_back('\n');
+	}
+	return out;
+}
+
+
+TEST (ReflowParagraph_IndentedBullets_PreserveStructure)
+{
+	InstallDefaultCommands();
+
+	Editor ed;
+	ed.SetDimensions(24, 80);
+
+	Buffer b;
+	// Test the example from the issue: indented list items should not be merged
+	const std::string initial =
+		"+ something at the top\n"
+		"  + something indented\n"
+		"+ the next line\n";
+	b.insert_text(0, 0, initial);
+	// Put cursor on first item
+	b.SetCursor(0, 0);
+	ed.AddBuffer(std::move(b));
+
+	Buffer *buf = ed.CurrentBuffer();
+	ASSERT_TRUE(buf != nullptr);
+
+	// Use a width that's larger than all lines (so no wrapping should occur)
+	const int width = 80;
+	ASSERT_TRUE(Execute(ed, std::string("reflow-paragraph"), std::string(), width));
+
+	const auto &rows         = buf->Rows();
+	const std::string result = to_string_rows(*buf);
+
+	// We should have 3 lines (plus possibly a trailing empty line)
+	ASSERT_TRUE(rows.size() >= 3);
+
+	// Check that the structure is preserved
+	std::string line0 = static_cast<std::string>(rows[0]);
+	std::string line1 = static_cast<std::string>(rows[1]);
+	std::string line2 = static_cast<std::string>(rows[2]);
+
+	// First line should start with "+ "
+	EXPECT_TRUE(line0.rfind("+ ", 0) == 0);
+	EXPECT_TRUE(line0.find("something at the top") != std::string::npos);
+
+	// Second line should start with "  + " (two spaces, then +)
+	EXPECT_TRUE(line1.rfind("  + ", 0) == 0);
+	EXPECT_TRUE(line1.find("something indented") != std::string::npos);
+
+	// Third line should start with "+ "
+	EXPECT_TRUE(line2.rfind("+ ", 0) == 0);
+	EXPECT_TRUE(line2.find("the next line") != std::string::npos);
+
+	// The indented line should NOT be merged with the first line
+	EXPECT_TRUE(line0.find("indented") == std::string::npos);
+
+	// Debug output if something goes wrong
+	if (line0.rfind("+ ", 0) != 0 || line1.rfind("  + ", 0) != 0 || line2.rfind("+ ", 0) != 0) {
+		std::cerr << "Reflow did not preserve indented bullet structure:\n" << result << "\n";
+	}
+}