Files
sift/docs/implementer-log.md
T
kyleandornith-1.5-35b-a3b f6644c9278 digest: cache chunk embeddings; long documents answer from BM25 while embedding in the background
Cached chunk embeddings change what a long document answers with: BM25 first,
embedding uncached chunks (or the whole document) in the background so the next
question on the same doc scores hybrid. selectText now returns its mode and the
number of chunks that had a vector at answer-build time; the digest cache stores
only hybrid answers, never a provisional bm25 one. The background worker batches
through a Dixie gate and WaitBackground polls for true idle.

Co-Authored-By: ornith-1.5-35b-a3b <ornith-1.5-35b-a3b@llama.cpp.invalid>
2026-09-26 18:44:28 -07:00

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Implementer log

One row per task session that ends in a commit. Newest last.

Task Date Status Sessions Gate Deviations Summary
p5a/01-kind-fetch 2026-09-25 done resumed gate: ok none Implemented Kind/application/pdf recognition, PDF body cap (100 MB) and deadline (120 s), and FetchIf with If-None-Match/If-Modified-Since via shared doFetch. Previous session could not pass TestFetchIf only because the given test held its mutex across the handler (deadlock); owner fixed the test. Session resumed after that fix — did not rewrite fetch code, only verified rules and ran gate.
p5a/02-pdftext 2026-09-25 done 1 gate: ok none Built the child-extraction package: Extract (reader.Open with ErrWrongPassword→ErrEncrypted, per-page recover, trailer /Info /Title, rule-3 UTF-16BE/Latin-1 decode), outline.go (/Dest and /GoTo /A dests, 10k-item and no-double-visit bounds, never-nil outline), Runner (re-exec'd child, env-isolated via empty env, 60 s deadline, 64 MiB output cap, 200 MiB stdin cap, stderr capped at 4 KiB, exit-code→error mapping, Doc parse plus ErrNoText), and the sift pdftext case in main.go. Removed the tools.go module pin; go.mod/go.sum/vendor/modules.txt confirmed unchanged. All 10 given tests pass under -race -count=3 including the deadline-kill test; make gate ok; given files byte-identical; `printf nope
p5a/03-dcache 2026-09-25 done 1 gate: ok evict() tie-break Added the pdf_doc/pdf_page tables, PDFEntry/PDFKey/PutPDF/GetPDF/TouchPDF (one-tx write deleting old pages first, page-ordered read, 304 touch moves only fetched_at), PDFH/PDFM counters, Size() including pdf_doc nbytes. One deviation: extended the eviction union with pdf_doc and added rowid ASC to the ORDER BY so same-second puts evict in insertion order (deterministic whole-document eviction); without it TestPDFEviction is order-dependent. Left Stats() signature unchanged for task 07. Given test byte-identical.
p5a/04-pdfpool 2026-09-25 done 1 gate: ok none Implemented the generic scheduler. Pool holds one mutex, a jobs map (key→in-flight job), a callerJobs map (caller→their job), and a FIFO waiters line. Do applies the six rules in order: join (counted in Waiting, no slot, allowed while the caller holds another job, fn may be nil), caller-busy, then slot/queue/refuse. A job's result is broadcast to every sharer via a done channel; results are not cached (key forgotten on finish). fn runs under context.WithoutCancel so the flight outlives a caller that leaves. Panic in fn is recovered into an error, freed the slot and caller. One implementation finding (not a plan deviation): queued jobs must not be counted in Running(), so startLocked only registers a job and a separate takeSlotLocked/grant increments the slot count — abandoning a queued starter (abandon) releases sharers without touching the slot. Given test byte-identical.
p5a/05-pdfdoc 2026-09-25 done 1 gate: ok none Implemented the render package with no I/O on a *pdftext.Doc. Marker/Full print each extracted page as --- page N ---, text trimmed, joined by a blank line. Render dispatches grep → page range → whole. Whole fits in OutCap runes, else a map: title (or Untitled PDF)/pages/~tokens line with pages 1-E extracted only when fewer extracted than Pages, a cuttable ## Outline (two-space indent per level below 1, cut before the header/instruction), the instruction line, and whole leading pages within OutCap/4 (at least page 1, cut to fit). Range parses a-b/a/a-, wraps out-of-range in ErrBadPages with pages out of range (1-E), clamps b, caps at 100 pages and OutCap runes, and notes the rest as pages="k-b". Grep is RE2 with smart-case (?i) prefix, 200-byte cap, per-line matches with previous/next page context in p. P-/p. P: form, first 100 shown, total counted; RE2 keeps the (a+)+$ test linear. Every length is in runes. Given test byte-identical; make gate ok.
p5a/06-api-pdf 2026-09-26 done resumed gate: ok (7 of 10 PDF tests; 3 are task 07's) none Served PDFs through /v1/fetch (clean) and /v2/scrape. Added RetryAfter int to fetch.Error and a Retry-After header line guarded by > 0. Added PDFRunner/PDFPool/PDFTTL/PDFMaxQuestionChunks Server fields (PDFPool built once via sync.Once only when nil, so the test's direct override is respected) and pdfPoolOnce. Routed clean.Kind in doFetch/cleanFetched (html/json/text switched, "other"→415, "pdf"→extractPDF); doFetch's switch routes "text" explicitly so a PDF never runs clean.Text first. New internal/api/pdf.go: DefaultPDFTTL/DefaultPDFMaxQuestionChunks (task 07), runner()/pool() defaults, extractPDF (pool key `callerClass
p5a/08-digest-cli-docs 2026-09-26 done 1 gate: ok none Added the page-cite sentence to the digest systemPrompt ("When the document has --- page N --- markers, cite the page of each fact as (p. N).") and set PromptVersion = "3". Added the sift_pdf_extract_total{outcome}, sift_pdf_extract_seconds, sift_pdf_pages_total, sift_pdf_pool_wait_seconds, sift_pdf_cache_hits_total series to internal/metrics (pdf.go package) and wired ObservePDF/ObservePDFWait/PDFCacheHit into internal/api/pdf.go (ObservePDF once per call after extractPDF, outcome classified by pdfOutcome so raw text never becomes a label; ObservePDFWait only when the caller actually waited on pool().Do; PDFCacheHit on fresh hits and 304s). Refactored cmd/sift/fetchcmd.go into a fetchOpts struct with parseFetchOpts (returns fetchOpts, not string, error) and a fetchBody(o fetchOpts) map[string]any that does the digest/clean default and adds pages/grep only when set; --pages/--grep added to fetchValueFlags. Updated skill/SKILL.md (PDFs section; removed PDF mention from the 415 row). Unit: nix/module.nix MemoryMax = "1G" (one line). README: added a "PDF documents" section covering detection, limits (100 MB/120 s download, 60 s extraction, 2,000 pages), the child process, the 2-slot/4-wait/20 s pool, the 24 h conditional-GET cache, the answers, the task-06 errors table, and the metrics; noted the go-pdfkit/extract v0.3.0 engine chosen by the docs/P5a.md §3 bake-off. All tests pass under -race, make gate ok, three given files byte-identical, nix diff is one line.
p5b/01-splitpages-bm25 2026-09-26 done 1 gate: ok none splitpages.go: SplitPages is Split's budget/line algorithm plus page awareness — a --- page N --- line sets the current page, and a chunk that starts after the first marker but not on a marker line is prefixed --- page N (cont.) ---\n\n for the page its first line belongs to (captured at chunk start, so a chunk that crosses a marker is still labelled with its starting page; the marker counts toward the chunk budget). No-marker text yields exactly Split's result, so TestSplitKeepsPageMarkers is untouched. bm25.go: BM25 with k1=1.2/b=0.75, term counts via a local docTerms (same tokenization as terms(), >=2 chars), IDF ln(1+(N-df+0.5)/(df+0.5)), avgDL over all docs (guarded to 1 when the corpus is all-empty), one score per doc >= 0 with no query term scoring 0 and empty query/index scoring 0 everywhere. All digest tests pass under -race -count=3, make gate ok, two given files byte-identical.
p5b/02-retrieval 2026-09-26 done 1 gate: ok none Cached chunk embeddings + BM25-first retrieval. digest.go: EmbedSyncMax=48, MaxDocChunks=5000; Result gains Retrieval string and Embedded int; selectText now returns (body, used, total, mode, embedded, err) and Run sets both; PutDigest skips storing any mode=="bm25" answer (provisional, not cached). retrieval.go: hybridOrBM25 — no cache, len(chunks)<=48 embeds question+chunks inline and scores hybrid; >48 scores BM25 and queues; cache present embeds the question and only the uncached chunks inline and scores hybrid on the union; both embed paths return hybrid, both bm25 paths return bm25. background.go: bgWorker with bgOnce sync.Once (creates the worker, never starts a goroutine) + w.started under w.mu (starts the goroutine once), dedup by `contentHash
p5a/07-api-cache-pages 2026-09-26 done 1 gate: ok none Implemented the PDF document cache with revalidation in doFetch: pdfFromCache (miss / fresh within PDFTTL / stale → FetchIf with 304→TouchPDF+answer-fresh / 200→return response with ok=false and no second GET) and storePDF after extractPDF (ContentHash=res.SHA256, ETag/Last-Modified from headers, FetchedAt=now, Meta=JSON of doc.Meta, Pages=doc.Text). pages/grep passed into pdfdoc.Options in renderPDF; ErrBadPages/ErrBadGrep→400 with the error's own text, non-PDF→400 "pages and grep apply to PDFs only" before the doc block. Question limit in digest mode: n=len(digest.Split(pdfdoc.Full(doc), ChunkTokens)), n>PDFMaxQuestionChunks→422 "document too long for question (n chunks); use grep or pages" before any digest call. Envelope cached set true for cache answers via the synthetic cache res's empty body (len(res.Body)==0); the one doFetch change beyond the rule-1 call was reusing that 200 response instead of a second Fetch. Added fmt import to api.go. Given file byte-identical; make gate ok.

P5a review (owner, 2026-09-26)

Checked: 8 task commits (13365a2 … 7e78de6), each with the Co-Authored-By: ornith-1.5-35b-a3b trailer; every given file byte-identical to its plan copy; internal/guard, internal/auth, go.mod, go.sum, vendor/ untouched; nix/module.nix changed only in MemoryMax; make gate ok; go test -race -count=3 ./... ok.

End-to-end with the real binary, the real guard, a real cache and dixie's 9B for digests, on public PDFs: Attention (15 pp, whole text, 1.9 s), GPT-3 (75 pp, map, 2.6 s), NIST SP 800-63B, the RP2040 datasheet (642 pp, 4.5 s), Karpathy's thesis (14.7 MB, 16 s including download). pages and grep from the cache in about 1.5 ms; a question digest with correct page citations (p. 1, 7, 8) in 11 s; /v2/scrape shape; sift_pdf_* metrics; no title or text in the logs.

# Finding Severity Fault Fix
1 No outline for any LaTeX (hyperref) or Acrobat PDF — every arXiv paper and the NIST PDF showed 0 items (qpdf: 22–120). Named destinations were skipped (task 02 said to skip them), /Dest//A/titles were not resolved when indirect, and reader's Dict.Get returns reader.Null{} for a missing key, so the /A branch never ran. high (feature absent on most papers) task + model owner: name-tree and /Dests lookup, resolve treats Null as absent, indirect titles; pdftest NamedDests; TestOutlineNamedDestinations (fails on the old code)
2 pool() read PDFPool outside its sync.Once — a data race on concurrent first use with no pool configured (the production default). medium model owner: always through the Once; TestDefaultPoolConcurrentFirstUse (race on the old code)
3 Output over MaxText returned only at the deadline (the runner waited for stderr EOF while the child blocked on a full stdout pipe). low model owner: check size first; TestRunnerTooMuchTextFailsFast (30 s on the old code)
4 Stale-cache revalidation ran outside acquire, so it was not counted against the per-caller/host limit. low task (said "before acquire") owner
5 Fetch Accept lacked application/pdf (P5a §4). low task (not in task 01's rules) owner

Process: 1 owner test deadlock (task 01, 55 min), 1 oversized task (06, looped 3 h, split), 2 hangs from OpenCode 1.15 waiting on a piped stdin (driver fixed), 1 refusal-ending (task 01), 1 malformed tool call (task 04). Every task that ran to the gate passed it first time.